Question: Cufflinks and StringTie
1
gravatar for qudrat
2.4 years ago by
qudrat70
NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
qudrat70 wrote:

Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers.

rna-seq assembly • 1.3k views
ADD COMMENTlink modified 2.4 years ago by Hussain Ather940 • written 2.4 years ago by qudrat70
1

Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers.

And what's your question? Do you expect one of us to come over and sit next to you or are you going to try some things on your own?

ADD REPLYlink written 2.4 years ago by WouterDeCoster44k
3
gravatar for Hussain Ather
2.4 years ago by
Hussain Ather940
National Institutes of Health, Bethesda, MD
Hussain Ather940 wrote:

Use bedtools intersect to find the intersection between the two assemblies http://bedtools.readthedocs.io/en/latest/content/tools/intersect.html

ADD COMMENTlink written 2.4 years ago by Hussain Ather940
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