Question: Cufflinks and StringTie
1
gravatar for qudrat
12 months ago by
qudrat60
NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
qudrat60 wrote:

Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers.

rna-seq assembly • 471 views
ADD COMMENTlink modified 12 months ago by Hussain Ather910 • written 12 months ago by qudrat60
1

Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers.

And what's your question? Do you expect one of us to come over and sit next to you or are you going to try some things on your own?

ADD REPLYlink written 12 months ago by WouterDeCoster37k
3
gravatar for Hussain Ather
12 months ago by
Hussain Ather910
National Institutes of Health, Bethesda, MD
Hussain Ather910 wrote:

Use bedtools intersect to find the intersection between the two assemblies http://bedtools.readthedocs.io/en/latest/content/tools/intersect.html

ADD COMMENTlink written 12 months ago by Hussain Ather910
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