Cytoscape : how to color same nodes with several colors ?
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6.1 years ago
ZheFrench ▴ 570

Cytoscape : how to color same nodes with several colors ? An example here in figure E :

Cytoscape • 5.7k views
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not working with cytoscape 3.6.1 Jar is downloaded from the link but not automatically installed.

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From Cytoscape, follow these steps:

Apps + App Manager + Install from file + Select it + Install it + Enjoy it :)

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Alreardy tried. No worked saying Jar is missing value from Cytoscape-App in its manifest file.

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As far as I know, this is a plugin for Cytoscape 2.x.

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You can use the enhancedGraphics app for this, which does work with 3.x

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The alternative would be to use R and the igraph package with pie charts as nodes.

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6.0 years ago
scooter ▴ 620

Sorry -- this should have been an answer, not a comment. You can use the enhancedGraphics app for this, which works fine in 3.x. The app store points to documentation on how to set things up.

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