Question: How can I find the region coordinates of my methylation EPIC Illumina data?
0
gravatar for Pin.Bioinf
12 months ago by
Pin.Bioinf240
Malaga
Pin.Bioinf240 wrote:

Hello, I have the results for EPIC Illumina sequencing, and I want to know to which region each cpG belongs to. How can I do that? Ive heard something about a manifest, and I downloaded it but Its too big to even open.

ADD COMMENTlink modified 12 months ago by h.mon24k • written 12 months ago by Pin.Bioinf240
0
gravatar for h.mon
12 months ago by
h.mon24k
Brazil
h.mon24k wrote:
grep "CpG" HumanMethylation450_15017482_v1-2.csv > HumanMethylation450_15017482_v1-2_CpG.csv

Now it is not that big (16Mb). It has 32k lines, though, so you still can't look one by one.

ADD COMMENTlink written 12 months ago by h.mon24k
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