Question: How to rank differentially expressed genes (output from EBSeq)?
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gravatar for John
2.3 years ago by
John210
United States
John210 wrote:

Hi, How to rank differentially expressed genes? I used EBSeq to find DE genes. Thanks

rna-seq R • 696 views
ADD COMMENTlink written 2.3 years ago by John210

From the manual it says:

The genes are ranked by their cross-condition mean (adjusted by the normalization factors)

ADD REPLYlink written 2.3 years ago by zx87549.4k

Why do you want to rank the genes for? You could use the logFC or the FDR to rank your genes. Are you looking for a command in R to do this?

ADD REPLYlink written 2.3 years ago by Matina170
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