How to rank differentially expressed genes (output from EBSeq)?
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6.0 years ago
John ▴ 270

Hi, How to rank differentially expressed genes? I used EBSeq to find DE genes. Thanks
R RNA-Seq rna-seq • 1.5k views
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From the manual it says:

The genes are ranked by their cross-condition mean (adjusted by the normalization factors)

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Why do you want to rank the genes for? You could use the logFC or the FDR to rank your genes. Are you looking for a command in R to do this?

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