Question: How to rank differentially expressed genes (output from EBSeq)?
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gravatar for Jon
18 months ago by
Jon130
United States
Jon130 wrote:

Hi, How to rank differentially expressed genes? I used EBSeq to find DE genes. Thanks

rna-seq R • 489 views
ADD COMMENTlink written 18 months ago by Jon130

From the manual it says:

The genes are ranked by their cross-condition mean (adjusted by the normalization factors)

ADD REPLYlink written 18 months ago by zx87548.2k

Why do you want to rank the genes for? You could use the logFC or the FDR to rank your genes. Are you looking for a command in R to do this?

ADD REPLYlink written 18 months ago by Matina170
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