Question: Protein inference tool: R package that accepts .mzid files?
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gravatar for Qroid
2.5 years ago by
Qroid40
Qroid40 wrote:

I have MS/MS data that I searched with MS-GF+. Unfortunately, MS-GF+ doesn't do protein inference, so I have a list of peptides in .mzid format. Our workflow is in R.

Putting all that together - does there exist an R package which will perform protein inference (i.e. give protein IDs) and accepts .mzid files?

I know there are R packages that do protein inference, and I know there are protein inference tools that accept .mzid, but I don't know of any tools that are both an R package and accept .mzid. Any help?

protein inference protein • 607 views
ADD COMMENTlink written 2.5 years ago by Qroid40
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