Question: Protein inference tool: R package that accepts .mzid files?
0
gravatar for Qroid
19 months ago by
Qroid40
Qroid40 wrote:

I have MS/MS data that I searched with MS-GF+. Unfortunately, MS-GF+ doesn't do protein inference, so I have a list of peptides in .mzid format. Our workflow is in R.

Putting all that together - does there exist an R package which will perform protein inference (i.e. give protein IDs) and accepts .mzid files?

I know there are R packages that do protein inference, and I know there are protein inference tools that accept .mzid, but I don't know of any tools that are both an R package and accept .mzid. Any help?

protein inference protein • 443 views
ADD COMMENTlink written 19 months ago by Qroid40
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 685 users visited in the last hour