I am new to ngs data analysis. I have the VCF file from targeted sequencing of 3 genes. How can i filter the variants using QUAL (phred score), GQ (genotype quality) and DP (read depth). What are the range of these parameters to get the confident variants out of hundreds of variants in VCF file.
Question: Variants calling (VCF)
2.8 years ago by
sarahkhanishere • 0
sarahkhanishere • 0 wrote:
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