Question: Gold standard datasets
1
gravatar for pinninti1991reddy
20 months ago by
pinninti1991reddy30 wrote:

Hi

Currently I'm looking to construct the robust genome analysis pipeline. I came across a lot of aligners , variant callers, Structural variant callers and Copy number variation (CNV) callers. But were I can find the raw datasets for all 5 genomes( HG001,HG002,HG003,HG004 and HG005 ) ?

Can any any one provide me the link. Thanks!

genome • 851 views
ADD COMMENTlink modified 20 months ago by d-cameron2.1k • written 20 months ago by pinninti1991reddy30
1

Hello pinninti1991reddy!

Please follow up on your questions. See C: Readgroups for a bam file ?

For this reason we have closed your question.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 20 months ago • written 20 months ago by RamRS25k

thanks for your response

ADD REPLYlink written 19 months ago by pinninti1991reddy30
1

Please provide feedback to d-cameron by responding to their answer, and I'll reopen this question. Thank you!

ADD REPLYlink written 19 months ago by RamRS25k

What does that mean, OP? Do you intend following up on your past posts?

ADD REPLYlink written 19 months ago by RamRS25k
4
gravatar for d-cameron
20 months ago by
d-cameron2.1k
Australia
d-cameron2.1k wrote:

I can find the raw datasets for all 5 genomes

The 'raw' data are physical cell lines. Genome in a Bottle genomes are literally a genome in a bottle that you can test your entire sequencing pipline from sample prep all the way to the end of the bioinformatics pipeline.

That said, there is plenty of reference sequence data at the GiaB website: http://jimb.stanford.edu/giab-resources/

ADD COMMENTlink modified 20 months ago • written 20 months ago by d-cameron2.1k

Thanks, I find the new benchmark datasets published by zook etal 2018 (Dr.Justin Zook).

ADD REPLYlink written 19 months ago by pinninti1991reddy30
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