Question: Gold standard datasets
2
gravatar for pinninti1991reddy
2.4 years ago by
pinninti1991reddy60 wrote:

Hi

Currently I'm looking to construct the robust genome analysis pipeline. I came across a lot of aligners , variant callers, Structural variant callers and Copy number variation (CNV) callers. But were I can find the raw datasets for all 5 genomes( HG001,HG002,HG003,HG004 and HG005 ) ?

Can any any one provide me the link. Thanks!

genome • 1.2k views
ADD COMMENTlink modified 2.4 years ago by d-cameron2.2k • written 2.4 years ago by pinninti1991reddy60
1

Hello pinninti1991reddy!

Please follow up on your questions. See C: Readgroups for a bam file ?

For this reason we have closed your question.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by RamRS30k

thanks for your response

ADD REPLYlink written 2.4 years ago by pinninti1991reddy60
1

Please provide feedback to d-cameron by responding to their answer, and I'll reopen this question. Thank you!

ADD REPLYlink written 2.4 years ago by RamRS30k

What does that mean, OP? Do you intend following up on your past posts?

ADD REPLYlink written 2.4 years ago by RamRS30k
4
gravatar for d-cameron
2.4 years ago by
d-cameron2.2k
Australia
d-cameron2.2k wrote:

I can find the raw datasets for all 5 genomes

The 'raw' data are physical cell lines. Genome in a Bottle genomes are literally a genome in a bottle that you can test your entire sequencing pipline from sample prep all the way to the end of the bioinformatics pipeline.

That said, there is plenty of reference sequence data at the GiaB website: http://jimb.stanford.edu/giab-resources/

ADD COMMENTlink modified 2.4 years ago • written 2.4 years ago by d-cameron2.2k

Thanks, I find the new benchmark datasets published by zook etal 2018 (Dr.Justin Zook).

ADD REPLYlink written 2.4 years ago by pinninti1991reddy60
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1253 users visited in the last hour