Question: How to extract sense and antisense transcript from .bam file using NASTIseq
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gravatar for bixuanjiang
12 months ago by
bixuanjiang0 wrote:

Hi All,

I want to extract sense and antisense transcript from .bam file using NASTIseq. The input smat and asmat are produced by htseq-count which following the post here. M. K. 's post here After running

ZSpred<-NASTIpredict(rice_ZS$smat,rice_ZS$asmat, rice_ZS$pospairs, negpairs),

ZSpred$predictions are consisted of half of "-Inf" result. So I can't continue to the next step to classify these results using ROCR. Hope someone help me figure out what's happening and what to do.

rna-seq R software error • 350 views
ADD COMMENTlink modified 12 months ago • written 12 months ago by bixuanjiang0
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