Identification of Common ROH region between two exomes

Question

[nkausthu]

Can anyone suggest me the best method to identify common ROH region between two exomes. I have the vcf files for both the samples and I initially used FILTUS but when I cross check FILTUS results manually, I could find heterozygous variants with in the ROH region given by FILTUS. Then I used bcftools but I am not getting proper results. Thanks in advance.

[WouterDeCoster]

I haven't used it, but the homwes tool in genomecomb developed by our department can find regions of homozygosity, see also the paper.