Question

how to retrieve sequences from genome

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6.0 years ago

bisht20diksha ▴ 30

Hello

I have a sequenced genome for my sample. Also for some genes i have chromosome start and end. Now i want to retrieve these sequences from genome? How can i retrieve these sequences from the sequenced genome?

genome sequences • 1.1k views

ADD COMMENT • link updated 6.0 years ago by WouterDeCoster 47k • written 6.0 years ago by bisht20diksha ▴ 30

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you can use extractseq in EMBOSS

ADD REPLY • link 6.0 years ago by reza ▴ 300

score 1 · Answer 1 · 2018-04-12

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6.0 years ago

WouterDeCoster 47k

This sounds like a job for bedtools getfasta

ADD COMMENT • link 6.0 years ago by WouterDeCoster 47k