I'm searching a tool to perform a disease gene prioritization. I have a list of seed genes, which are related to a particular disease, and a candidate genes list which I want to prioritize to obtain a gene ranking. In addition, I have protein-protein interaction data.
The problem is that I can't find a tool which allows to load your own protein-protein interaction network. The only I found it's DaDa (http://compbio.case.edu/omics/software/dada/) but I don't have a license for MATLAB.