Question: Can't upgrade deeptools 2.5.7 to 3.0 via conda 4.5.0 on Debian Jessie
0
gravatar for ZheFrench
9 weeks ago by
ZheFrench130
France
ZheFrench130 wrote:

Can't upgrade deeptools 2.5.7 to 3.0 via conda 4.5.0 on Debian Jessie

~$ conda update deeptools
Solving environment: done

# All requested packages already installed.

~$ conda install -c bioconda deeptools
Solving environment: done

# All requested packages already installed.

~$ deeptools --version
deeptools 2.5.7
deeptools • 170 views
ADD COMMENTlink modified 9 weeks ago by Devon Ryan80k • written 9 weeks ago by ZheFrench130
0
gravatar for Devon Ryan
9 weeks ago by
Devon Ryan80k
Freiburg, Germany
Devon Ryan80k wrote:

conda update deeptools works for me (just upgraded from 2.5.3), but you can always conda remove deeptools and then conda install deeptools.

ADD COMMENTlink written 9 weeks ago by Devon Ryan80k

Humm strange...

conda remove deeptools
Solving environment: done

## Package Plan ##

  removed specs:
    - deeptools

The following packages will be REMOVED:

    deeptools: 2.5.7-py35_0 bioconda

Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done

$ conda install deeptools
Solving environment: done

## Package Plan ##

  environment location: /home/bin/anaconda3

  added / updated specs:
    - deeptools


The following NEW packages will be INSTALLED:

    deeptools: 2.5.7-py35_0 bioconda

Proceed ([y]/n)?
ADD REPLYlink modified 9 weeks ago • written 9 weeks ago by ZheFrench130
1

You must have some weird cache going on somewhere. The tarball for python 3.5 is definitely available.

ADD REPLYlink modified 9 weeks ago • written 9 weeks ago by Devon Ryan80k
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