Question: GATK current version downloading fails
0
gravatar for shuksi1984
7 months ago by
shuksi198430
shuksi198430 wrote:

I am trying to download GATK latest version from the given link: https://software.broadinstitute.org/gatk/download/index

I have been trying multiple times, but it fails after sumtime. There is no internet issue, as I have downloaded the entire fastq.gz (~6GB) file for RNAseq.

My desktop configuration is: HDD~500GB RAM-7.7GB OS-Ubuntu 16.04LTS, 64bit

ADD COMMENTlink modified 7 months ago by zhenyisong130 • written 7 months ago by shuksi198430

Use wget --continue *link*.

ADD REPLYlink modified 7 months ago • written 7 months ago by h.mon21k
1
gravatar for zhenyisong
7 months ago by
zhenyisong130
China
zhenyisong130 wrote:

you can try miniconda to mange your software version. GATK4 has already lifted its restriction.

conda install -c bioconda gatk
ADD COMMENTlink modified 7 months ago • written 7 months ago by zhenyisong130

Thanks, but tried the other way.

1.Downloaded the zipped file in my local machine through web. 2.Copied the zipped file in server through SCP. 3.Unzipped and installed.

It worked...!

ADD REPLYlink written 7 months ago by shuksi198430
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1292 users visited in the last hour