Question: GATK current version downloading fails
0
gravatar for shuksi1984
8 days ago by
shuksi198410
shuksi198410 wrote:

I am trying to download GATK latest version from the given link: https://software.broadinstitute.org/gatk/download/index

I have been trying multiple times, but it fails after sumtime. There is no internet issue, as I have downloaded the entire fastq.gz (~6GB) file for RNAseq.

My desktop configuration is: HDD~500GB RAM-7.7GB OS-Ubuntu 16.04LTS, 64bit

ADD COMMENTlink modified 8 days ago by zhenyisong120 • written 8 days ago by shuksi198410

Use wget --continue *link*.

ADD REPLYlink modified 8 days ago • written 8 days ago by h.mon13k
0
gravatar for zhenyisong
8 days ago by
zhenyisong120
China
zhenyisong120 wrote:

you can try miniconda to mange your software version. GATK4 has already lifted its restriction.

conda install -c bioconda gatk
ADD COMMENTlink modified 8 days ago • written 8 days ago by zhenyisong120

Thanks, but tried the other way.

1.Downloaded the zipped file in my local machine through web. 2.Copied the zipped file in server through SCP. 3.Unzipped and installed.

It worked...!

ADD REPLYlink written 6 days ago by shuksi198410
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