Question: best CDS prediction tool for online annotation submission
gravatar for willnotburn
8 months ago by
United States, Michigan State Universtiy
willnotburn40 wrote:

I would like to annotate a metagenomic assembly with KEGG using the GhostKOALA service. The assembly was produced with megahit and is in FASTA format. GhostKOALA requires amino acid .faa files as input.

Question: what's the best tool to translate the assembly? I'm thinking to use prodigal to detect CDS features and feed those to GhostKOALA. Is there anything out there that's better/faster/newer? I also have bins, and it would be nice to detect rRNA in those, too.

ADD COMMENTlink modified 8 months ago • written 8 months ago by willnotburn40
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1548 users visited in the last hour