Question: best CDS prediction tool for online annotation submission
gravatar for willnotburn
2.5 years ago by
United States, Michigan State Universtiy
willnotburn40 wrote:

I would like to annotate a metagenomic assembly with KEGG using the GhostKOALA service. The assembly was produced with megahit and is in FASTA format. GhostKOALA requires amino acid .faa files as input.

Question: what's the best tool to translate the assembly? I'm thinking to use prodigal to detect CDS features and feed those to GhostKOALA. Is there anything out there that's better/faster/newer? I also have bins, and it would be nice to detect rRNA in those, too.

ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by willnotburn40
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1207 users visited in the last hour