Question: fastq file split in chromosome
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blooming.daisy333 • 0 wrote:
im newbie to NGS and linux. can anyone kindly let me know the easiest way to split the fasta file containing chromosome and scaffold into individual files i.e files containing one chromosome per file... thanks
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modified 8 days ago
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Bastien Hervé • 600
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8 days ago by
blooming.daisy333 • 0
How do you know which scaffold belongs to which chromosome ? If you don't, you'll have to align all your scaffolds on a reference genome. If you have the information in your scaffold headers, you can split your file with a python script for example.
sorry it was about Fasta file containing genome sequence and not fastq. i need each chromosome to be in single seperate file rather to be all the genome in one fasta file. any help plz???
Aah, I got it, you have a reference genome in fasta and you want to split each sequence to a separated file, isn't it ?
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