Question: How to do Tajima's D analysis?
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gravatar for amitgourav.ghosh12
7 months ago by
amitgourav.ghosh1230 wrote:

Can anyone please suggest how to do Tajima's D analysis and the software required? Or can you please provide me with the links of similar answers. I want to detect signature of positive selection of certain alleles in my database.

snp genome • 417 views
ADD COMMENTlink modified 7 months ago • written 7 months ago by amitgourav.ghosh1230
1

Did you try searching in the biostars search engine or Google with +site:biostars.org? I can see related questions in the sidebar. Please show us you've invested some effort.

ADD REPLYlink written 7 months ago by RamRS19k

Hello Sir, indeed there are plenty of questions in the site. What I learnt till now is that one can use the package "pegas" in R or use dnasp v.5 or vcf tools for this purpose. I have binary format files from plink and the individuals respective MAFs, but not sequences. I am planning to download vcf tools and try out there if possible.

Thank you!

ADD REPLYlink written 7 months ago by amitgourav.ghosh1230
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