bowtie 2 - source code requirement

Question

[deucy@646]

here is the part of the bowtie wrapper script , i need to get accession for the source code of following files which are made bold in the below script. I am trying to modify the script for my needs but i am unable to get source code.

($vol,$script_path,$prog) 
                = File::Spec->splitpath($prog);
my $os_is_nix   = $^O ne "MSWin32";
my $align_bin_s = $os_is_nix ? **'bowtie2-align-s'** : 'bowtie2-align-s.exe'; 
my $build_bin   = $os_is_nix ? **'bowtie2-build'** : 'bowtie2-build.exe';               
my $align_bin_l = $os_is_nix ? **'bowtie2-align-l'** : 'bowtie2-align-l.exe'; 
my $align_prog_s= File::Spec->catpath($vol,$script_path,$align_bin_s);
my $align_prog_l= File::Spec->catpath($vol,$script_path,$align_bin_l);
my $align_prog  = $align_prog_s;
my $idx_ext_l     = 'bt2l'; 
my $idx_ext_s     = 'bt2'; 
my $idx_ext       = $idx_ext_s; 
my %signo       = ();
my @signame     = ();

[WouterDeCoster]

I added code markup to your post for increased readability. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar, see image below:

In addition, I converted this from a "Tool" to a "Question". "Tool" should only be used for announcing new tools.

[GenoMax]

What do you mean you are unable to get source code?

Yikes this is windows. If you are using Win 10 then I recommend that you install Linux subsystem for Windows 10. That can avoid all sorts of issues with compiling things for windows.

You can find the source code for bowtie2 here.

[deucy@646]

thank you , In linux version i'm getting all binary files, how can i get code for 'bowtie2-align-s'. ..?

and also i have source code but i want to identify the file which has code for the above mentioned file.

[GenoMax]

File that says *source.zip is the source code. That is source code for the entire package which will produce multiple executables.

[deucy@646]

sir i was unable to find the code in *sourcre.zip . I want code specifically for file 'bowtie2-align-s'.

[Devon Ryan]

Like most things, it's on github