I want to extract common SNP between two vcf files:
vcf1: hg19 genomic co-ordinate
vcf2: Refseq/LRG cDNA co-ordinate.
To get common vcf between these files. I need to convert hg19 genomic co-ordinate to LRG/RefSeq cDNA co-ordinate.
Can anyone please suggest me how to convert hg19 genomic co-ordinate to LRG/RefSeq cDNA co-ordinate?
Thak you in advance
Can you provide an instance of your second vcf?
Thank you, Reza, for your time.
Actually, I have data in below format, not in VCF
See this post on how to add images to a post: [WorkInProgress]How to add images to a post