Star-Fusion last-matching gene pairs file
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3.5 years ago
genya35 ▴ 40

Hello,

Could you please clarify the correct file to use as a last-matching gene pairs file for Star-Fusion. I ran human exome RNA-seq data through Star within Galaxy and would like to continue analysis with Star-Fusion.

I'm looking for hg19 fusions but not sure which of the files 'plug-in-play' or 'source-data' to download and upload to galaxy for analysis. Could you please specify the exact file I need to use. The 'source-data' folder contains numerous files including:

ref_genome.fa, CTAT_HumanFusionLib.v0.1.0.dat.gz ref_annot.gtf

Here is the location of the CTAT files: https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/

Thanks

RNA-Seq • 917 views
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Entering edit mode
3.5 years ago

Cross-posted and answered here: https://biostar.usegalaxy.org/p/27607

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