Substitution model testing tool for linux command line

Question

[shadowstep]

Mega 7 has a function to find best DNA models, it will give a complete analyze table with parameters

In linux command line, is there a package that can do this job? I want to validate the results from Mega. Thank you.

Answer 1

[h.mon]

There are jModelTest2 (I believe it has been retired) and ModelTest-NG (sucessor of jModelTest). IQ-TREE also apparently can also perform substitution model selection. There are some other older tools, but I think those are the most recent ones.