Gene enrichment analysis
1
0
Entering edit mode
3.6 years ago
AP ▴ 60

Hello everyone,,

I am working with RNAseq data from a fungi for which we don't have genome annotation. I have a draft genome and list of predicted genes from Augustus. From RNAseq I have list of genes for which I want to do enrichment analysis. I tried to use DAVID for which I tried to get UniProt ID, but this does not work for me since they don't have option to scan the list. I am also trying BLast2Go but it is taking a long time. I also did InterProscan from which I have Pfam Ids. I tried to convert Pfam ID to UniPro ID but it gives me a list of ID for a Pfam Id.

Can you suggest some better option for my case or can you please pinpoint what I am missing. I will really appreciate your help.I need to graduate soon but this is going nowhere.

Thank you, Ambika

gene_enrichment david blast2go uniprot • 914 views
ADD COMMENT
2
Entering edit mode
3.6 years ago
Buffo ★ 1.9k

Try with FungiDB it has GO and some others strategies.

ADD COMMENT
0
Entering edit mode

Thank you I will try that

ADD REPLY

Login before adding your answer.

Traffic: 2887 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6