Question: Annovar for mouse buildver and downdb?
2
gravatar for Sharon
11 months ago by
Sharon420
Sharon420 wrote:

Hi All

I am trying to use annovar for mosue data. I used this command to create the mouseDB:

perl annotate_variation.pl -buildver mm10 -downdb -webfrom annovar refGene mousedb/

And it works fine and got he refgene db for mouse.

Now, I need to build the rest of annotation fields. something like humanDB: Something like this work on human but doesn't in mouse:

perl annotate_variation.pl -buildver mm10 -downdb -webfrom annovar dbnsfp30a mousedb/

Anyone knows the corresponding way for getting annotations for mouse?

Thanks

annovar vcf • 430 views
ADD COMMENTlink written 11 months ago by Sharon420
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