Question: Different TCGA file IDs with same the Sample ID
0
gravatar for ahadli.farid
2.1 years ago by
ahadli.farid20
ahadli.farid20 wrote:

Hi everyone,

I have recently downloaded miRNA sequencing data of LUAD project from TCGA. However, there seems to be some File IDs which corresponds to the same Sample ID. How should I handle them? Take the Average? Thanks in advance.

**Hope the post is appropriate for this site.

rna-seq tcga • 1.4k views
ADD COMMENTlink written 2.1 years ago by ahadli.farid20
0
gravatar for Kevin Blighe
2.1 years ago by
Kevin Blighe59k
Kevin Blighe59k wrote:

This is common but, to be sure, please paste here the IDs in question.

ADD COMMENTlink written 2.1 years ago by Kevin Blighe59k
901c2a13-dc84-4bfb-af07-7ce7e709599e
3b13a55a-11a2-4120-867d-489a5d190c0d

File IDs above corresponds to TCGA-44-6775-01A

ADD REPLYlink modified 2.1 years ago by genomax83k • written 2.1 years ago by ahadli.farid20
1

Yes, this is the same issue as per a recent question: Samples with same TCGA barcode in TCGA data

They are 2 aliquots from the same biopsy. Please read the advice in the other question in order to decide what to do.

Kevin

ADD REPLYlink written 2.1 years ago by Kevin Blighe59k
1

Thank you a lot! It helped.

ADD REPLYlink written 2.1 years ago by ahadli.farid20
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