Question: Where to find archived NCBI taxonomy file
0
gravatar for jesselee516
18 months ago by
jesselee516100
United States
jesselee516100 wrote:

Hi all,

I am curious whether or not there is archived NCBI taxonomy lineage file(names.dmp and nodes.dmp). I know I can download the newest version from NCBI taxonomy. But I am interested in some old version. Because they updated that database quickly.

ADD COMMENTlink modified 17 months ago • written 18 months ago by jesselee516100

There was NCBI-reform in 2014.

Here I saved an old version.

where can I get environmental bacteria genome in fasta format (as many as possible)?

Will it be helpful to you? I am not sure.

Look also here:

NCBI taxonomy ids in a file

But here the information you need is current.

Manipulating Ncbi Dumped Files

ADD REPLYlink modified 18 months ago • written 18 months ago by natasha.sernova3.6k

Hi natasha,

Thanks for help. Sorry for not clearly ask my question. I am actually the historical lineage information(should be names.dmp and node.dmp files), like when some phylum, class, order, family, genus and species added into the database.

ADD REPLYlink written 17 months ago by jesselee516100

You should email NCBI Help desk and ask them about this. I don't think this information is likely to be available on NCBI web site.

ADD REPLYlink written 17 months ago by genomax72k

Ok. Thanks for your suggestion

ADD REPLYlink written 17 months ago by jesselee516100
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