Question: Download multiple PDB from text file
0
gravatar for cc
16 months ago by
cc20
cc20 wrote:

hello, I've been recently trying to download multiple PDB sequence entries from a text file called list_PDB.txt In this file there are 6000 pdb like

2yp7.pdb
2m5t.pdb
2zu0.pdb

Is possible to download from text file this pdb entries?? (I use LINUX) thank you

sequence pdb • 451 views
ADD COMMENTlink modified 16 months ago by Pierre Lindenbaum122k • written 16 months ago by cc20

There is no need TO SHOUT A TITLE. I have adapted your post and removed the all caps title.

I also added markup to your post for increased readability. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar, see image below:

101010 Button

ADD REPLYlink modified 16 months ago • written 16 months ago by WouterDeCoster40k

https://www.rcsb.org/pdb/static.do?p=download/web_download/download.jsp ??

ADD REPLYlink written 16 months ago by Pierre Lindenbaum122k

there isn't possibility from terminal using for example wget ? using this for example wget ftp://ftp.wwpdb.org/pub/pdb/data/structures/all/pdb/* download everything and I would like only 6000 pdb from txt file not all database

ADD REPLYlink written 16 months ago by cc20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1120 users visited in the last hour