Question: Download multiple PDB from text file
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gravatar for cc
23 months ago by
cc20
cc20 wrote:

hello, I've been recently trying to download multiple PDB sequence entries from a text file called list_PDB.txt In this file there are 6000 pdb like

2yp7.pdb
2m5t.pdb
2zu0.pdb

Is possible to download from text file this pdb entries?? (I use LINUX) thank you

sequence pdb • 785 views
ADD COMMENTlink modified 23 months ago by Pierre Lindenbaum127k • written 23 months ago by cc20

There is no need TO SHOUT A TITLE. I have adapted your post and removed the all caps title.

I also added markup to your post for increased readability. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar, see image below:

101010 Button

ADD REPLYlink modified 23 months ago • written 23 months ago by WouterDeCoster43k

https://www.rcsb.org/pdb/static.do?p=download/web_download/download.jsp ??

ADD REPLYlink written 23 months ago by Pierre Lindenbaum127k

there isn't possibility from terminal using for example wget ? using this for example wget ftp://ftp.wwpdb.org/pub/pdb/data/structures/all/pdb/* download everything and I would like only 6000 pdb from txt file not all database

ADD REPLYlink written 23 months ago by cc20
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