Hello everyone, I have BigWig files from a ChIP-Seq experiment. I need to find the differences between the two tissues. How can I find the information like differentially changed genes with p-values or fold changes of peaks between two tissues? Maybe a desktop app to visualize my files can work.
I am sorry my question is really simple maybe but I am in a rush and I only have BigWig files. Also I can convert BigWig files to BedGraph files.