Off topic:install of STAR
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6.0 years ago
yueli7 ▴ 250

Hello,

I downloaded the STAR-2.6.0a from https://github.com/alexdobin/STAR/releases, following the file README.md. It looks has compiled.

cd STAR/source
make STAR

When I ran this program, it said command not found.

Thank in advance for great help!

Yue

root@ACB-HuangLab-Ubuntu:/media/administrator/DATA/STAR-2.6.0a/source# STAR
STAR:未找到命令

root@ACB-HuangLab-Ubuntu:/media/administrator/DATA/STAR-2.6.0a/source# ls
alignSmithWaterman.cpp                       genomeParametersWrite.cpp                 ReadAlignChunk.cpp                          sjdbInsertJunctions.o
alignSmithWaterman.h                         genomeParametersWrite.h                   ReadAlignChunk.h                            sjdbLoadFromFiles.cpp
alignSmithWaterman.o                         genomeParametersWrite.o                   ReadAlignChunk_mapChunk.cpp                 sjdbLoadFromFiles.h
BAMbinSortByCoordinate.cpp                   genomeSAindex.cpp                         ReadAlignChunk_mapChunk.o                   sjdbLoadFromFiles.o
BAMbinSortByCoordinate.h                     genomeSAindex.h                           ReadAlignChunk.o                            sjdbLoadFromStream.cpp
BAMbinSortByCoordinate.o                     genomeSAindex.o                           ReadAlignChunk_processChunks.cpp            sjdbLoadFromStream.h
BAMbinSortUnmapped.cpp                       genomeScanFastaFiles.cpp                  ReadAlignChunk_processChunks.o              sjdbLoadFromStream.o
BAMbinSortUnmapped.h                         genomeScanFastaFiles.h                    ReadAlign_CIGAR.cpp                         sjdbPrepare.cpp
BAMbinSortUnmapped.o                         genomeScanFastaFiles.o                    ReadAlign.cpp                               sjdbPrepare.h
bam_cat.c                                    GlobalVariables.cpp                       ReadAlign_createExtendWindowsWithAlign.cpp  sjdbPrepare.o
bam_cat.h                                    GlobalVariables.h                         ReadAlign_createExtendWindowsWithAlign.o    sortSuffixesBucket.h
bam_cat.o                                    hg38.fa                                   ReadAlign.h                                 STAR
BAMfunctions.cpp                             Homo_sapiens.GRCh38.83.gtf                ReadAlign_mapOneRead.cpp                    STAR.cpp
BAMfunctions.h                               htslib                                    ReadAlign_mapOneRead.o                      STAR.o
BAMfunctions.o                               IncludeDefine.h                           ReadAlign_mappedFilter.cpp                  Stats.cpp
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