Entering edit mode
6.0 years ago
yueli7
▴
250
Hello,
I downloaded the STAR-2.6.0a from https://github.com/alexdobin/STAR/releases, following the file README.md. It looks has compiled.
cd STAR/source
make STAR
When I ran this program, it said command not found.
Thank in advance for great help!
Yue
root@ACB-HuangLab-Ubuntu:/media/administrator/DATA/STAR-2.6.0a/source# STAR
STAR:未找到命令
root@ACB-HuangLab-Ubuntu:/media/administrator/DATA/STAR-2.6.0a/source# ls
alignSmithWaterman.cpp genomeParametersWrite.cpp ReadAlignChunk.cpp sjdbInsertJunctions.o
alignSmithWaterman.h genomeParametersWrite.h ReadAlignChunk.h sjdbLoadFromFiles.cpp
alignSmithWaterman.o genomeParametersWrite.o ReadAlignChunk_mapChunk.cpp sjdbLoadFromFiles.h
BAMbinSortByCoordinate.cpp genomeSAindex.cpp ReadAlignChunk_mapChunk.o sjdbLoadFromFiles.o
BAMbinSortByCoordinate.h genomeSAindex.h ReadAlignChunk.o sjdbLoadFromStream.cpp
BAMbinSortByCoordinate.o genomeSAindex.o ReadAlignChunk_processChunks.cpp sjdbLoadFromStream.h
BAMbinSortUnmapped.cpp genomeScanFastaFiles.cpp ReadAlignChunk_processChunks.o sjdbLoadFromStream.o
BAMbinSortUnmapped.h genomeScanFastaFiles.h ReadAlign_CIGAR.cpp sjdbPrepare.cpp
BAMbinSortUnmapped.o genomeScanFastaFiles.o ReadAlign.cpp sjdbPrepare.h
bam_cat.c GlobalVariables.cpp ReadAlign_createExtendWindowsWithAlign.cpp sjdbPrepare.o
bam_cat.h GlobalVariables.h ReadAlign_createExtendWindowsWithAlign.o sortSuffixesBucket.h
bam_cat.o hg38.fa ReadAlign.h STAR
BAMfunctions.cpp Homo_sapiens.GRCh38.83.gtf ReadAlign_mapOneRead.cpp STAR.cpp
BAMfunctions.h htslib ReadAlign_mapOneRead.o STAR.o
BAMfunctions.o IncludeDefine.h ReadAlign_mappedFilter.cpp Stats.cpp
BA