Question: bacteria genomes Environment data
0
gravatar for qqq2395
2.3 years ago by
qqq23950
qqq23950 wrote:

Hello. The NCBI genome nclude a summary header

e.g https://www.ncbi.nlm.nih.gov/genome/167?genome_assembly_id=161521 With the line "Environment". Environment: OxygenReq:Facultative, OptimumTemperature:37, TemperatureRange:Mesophilic, Habitat:HostAssociated

I wish to download genomes with a specific Environment filed (e.g OxygenReq:Facultative). Where this data is located? I can not find this data in the bacteria ftp directory.

Thanks.

ftp ncbi bacteria • 451 views
ADD COMMENTlink modified 16 months ago by Biostar ♦♦ 20 • written 2.3 years ago by qqq23950
0
gravatar for swati.6783
2.3 years ago by
swati.678310
Singapore
swati.678310 wrote:

Hello

These are the environmental properties for the given genome assembly. You can not separate the sequenced based on one.

Swati

ADD COMMENTlink written 2.3 years ago by swati.678310

Thanks, I saw some papers who manages to use a file names lproks.cgi (http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi) but I can not locate this file anymore. Is it needed to download a full assemble to grab this data per a genome?

ADD REPLYlink written 2.3 years ago by qqq23950
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