Closed:bbsplit result statistics
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6.1 years ago

I use BBSplit.sh to run my analysis like this:

./bbmap/bbsplit.sh in1=R1_001_bc_prefix.fastq.gz  in2=R2_001_bc_prefix.fastq.gz  ref=hg19.fa,mm10.fa  basename=out_%.bam threads=4  ambig2=best

I want to know my mapping quality and statistics. How could I access the result? Thanks!

Simon

bbsplit bbmap quality check Tool • 208 views
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