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Question: I have few Differentially expressed miRNAs out of edgeR ?
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gravatar for Björn
2.7 years ago by
Björn • 50
Björn • 50 wrote:

I have found Differentially expressed miRNAs out of edgeR. What are next steps for pathway analysis ? Any literature would be appreciated. I used Targetscan to find genes that are associated with individual miRNAs. But I believe there are many other steps to perform before I can finally prepare result to publish.

mirnas go pathway analysis enrichment analysis • 740 views
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modified 7 weeks ago by Kevin Blighe ♦ 69k • written 2.7 years ago by Björn • 50
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gravatar for Kevin Blighe
7 weeks ago by
Kevin Blighe ♦ 69k
Republic of Ireland
Kevin Blighe ♦ 69k wrote:

Hi, I have used miRNAtap a few times in the past, including recently. It finds target genes of your statistically significant micro RNAs. You can then feed these target genes into enrichment programs like topGO and KEGGprofile. See my answer here: A: Identifying miRNA, RNA-binding sites in UTRs

Kevin
ADD COMMENT • link written 7 weeks ago by Kevin Blighe ♦ 69k
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