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• miRNA differential expression
  Hello, I am doing miRNA differential expression analysis from the Read counts, but I have few qu...
• How to combine differentially expressed miRNAs to calculate molecular signature score in edgeR?
  I have 15 DE miRNAs between groups A and B. Is there a way to combine let's say DE of 5 miRNAs of...
• Is there any recommended steps/pipeline for identifying differential miRNA expression profile?
  Hello friends, I have small RNA sequenced from bovine using Illumina platform. I would like to k...
• Tcga Mirnaseq Differential Analysis: U-Test Or Edger-Like Approaches On Rpm Values
  Let's assume that I have two conditions and I would like to do a differential miRNA expression an...
• Mirna Differential Expression
  Hello, I have miRNA short read data for few samples. I want to do differential analysis to find ...
• Differentially Expressed miRNA analysis : DEseq VS. Cuffdiff
  Hello,  I am trying to identify differentially expressed microRNAs from my NGS data. I have two...
• Ngs Of Mirna, Differential Expression With No Replicate Sample
  Hi every one, I am so happy to find you as I am new in NGS area. I have a set of miRNA data co...
• How to obtain RPKM/FPKM from HTSeq-Count data?
  Hi there, I am currently working on a project related to pan-cancer analysis. I have done diffe...
• differential expression of miRNA
  Hi, I am working on elucidating pathologically relevant miRNAs responsible for disease progressi...
• EdgeR: different values in expression and differential expression tables
  Hi,  I am running EdgeR as a part of a bigger pipeline (CAP-miRSeq to be precise) where I quantif...
• I want to find differentially expressed miRNAs between 4 groups
  Hi,  I have some miRNA expression data and I want to identify the differentially expressed miRNA...
• Is there some databases can predict the function of miRNA
  I have get a series of differential expressed miRNA from the microArray between the disease peopl...
• Differential Gene Expression (EdgeR?) : What are the steps in computing this?
  I'm taking a look at EdgeR. I know R a little bit but I'm much better at Python using Scipy, Num...
• Read Counts from miRDeep2 for posterior DE analysis
  Hello everyone, I would appreciate some help with my data: I've been analysing some NGS miRNA da...
• differentially expressed miRNA
  Hi I have downloaded miRNA seq from TCGA data. I have got many files such as raw counts, RPM and ...
• Edger To Find De And Non-De Reads
  I’m using EdgeR to find differentially expressed reads within 100bp windows. To help my analysis ...
• Heatmap: edgeR counts and DEG
  I have used edgeR in Galaxy to perform differential expression analysis. As output I have 3 files...
• Visualizing microRNA expression network
  Hi All, I have a list of differentially expressed microRNA (using edgeR GLM model) which I have ...
• How to take input TCGA miRNA data in Limma R package for differential expression
  I have set of miRNA data from TCGA. I want differential expression analysis using limma R package...
• Trinity error using Perl script
  Hello all, I am working on `Trinity` for de-novo assembly of my data but stuck at differential g...
• How to perform a gene set analysis in edgeR?
  I would like to test if the certain genes (~400) are differentially expressed between 2 condition...
• DEseq/ EdgeR RNaseq calculation of fold change
  I was wondering if it is reasonable to use DEseq/ edgeR packages to call differential expression ...
• Batch effects (PCA analysis): MiRNA differential expression analysis with reads from the bacterial symbiont in the background
  (This is my first time to post a question on Biostar, please let me know if you need any more inf...