Question: (Closed) C extension: No module named 'pandas._libs.tslib' not built (pandas)
0
gravatar for Chvatil
2.5 years ago by
Chvatil50
Chvatil50 wrote:

'm actually using the pandas module in my script.

The scipt is running on a server in ssh with python3. Usually, I export the programm file on my home server and then I change the PYTHONPATH.

But I actually got this error message;

Traceback (most recent call last):
  File "/me/scripts/divergence.py", line 22, in <module>
    import pandas as pd
  File "/me/TOOLS/pandas-master/pandas/__init__.py", line 35, in <module>
    "the C extensions first.".format(module))
ImportError: C extension: No module named 'pandas._libs.tslib' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.

Anyone has an idea?

THANKS

pandas python3 • 17k views
ADD COMMENTlink written 2.5 years ago by Chvatil50
1

have you ran the setup.py command that it suggests?

ADD REPLYlink written 2.5 years ago by russhh5.5k

Yes but there is no setup.py file in the pandas folder. Where should I run setup.py?

ADD REPLYlink written 2.5 years ago by Chvatil50
1

How was this installed?

ADD REPLYlink written 2.5 years ago by Devon Ryan97k

Usually, I export the programm file on my home server and then I change the PYTHONPATH

Why is that necessary? Can you add the commands you used?

ADD REPLYlink modified 2.5 years ago • written 2.5 years ago by WouterDeCoster44k

for exemple: export PYTHONPATH=$PYTHONPATH:/me/TOOLS/packages

ADD REPLYlink written 2.5 years ago by Chvatil50

Why is that necessary? How did you install these modules?

ADD REPLYlink written 2.5 years ago by WouterDeCoster44k

This is not bioinformatics, strictly speaking. If another mod agrees, the question can be closed and OP redirected to Stack Overflow.

ADD REPLYlink written 2.5 years ago by RamRS30k

Except if Toto26 can add some context to this post, convincing us this is bioinformatics?

ADD REPLYlink written 2.5 years ago by WouterDeCoster44k

Of course. However, installing pandas should be something to talk to SE, not us. We do install pandas, but we also set up NAS servers when required. Boundaries need to be drawn, no? :-)

ADD REPLYlink written 2.5 years ago by RamRS30k

See similar posts, with solutions: No module named 'pandas._libs.tslibs.timedeltas' in PyInstaller and Pandas missing 'pandas._libs.tslibs.timedeltas.so'.

ADD REPLYlink written 2.5 years ago by h.mon31k

Hello Toto26!

We believe that this post does not fit the main topic of this site, as it is not a strict bioinformatics question, and it is more suitable to Stack Overflow. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree, please provide the background explaining the bioinformatics context, but before doing so, please first try the solutions from the links I provided.

Cheers!

ADD REPLYlink modified 2.5 years ago • written 2.5 years ago by h.mon31k
Please log in to add an answer.
The thread is closed. No new answers may be added.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1033 users visited in the last hour