Question: IGV: how is "Quality weight allele fraction" calculated?
gravatar for omer.k
2.1 years ago by
omer.k40 wrote:

I'm inspecting raw NGS reads from human using IGV. The allele frequency threshold is kept at the default 0.2.

Yet this is apparently "Quality weight allele fraction" (IGV Preferences) and not regular fraction (e.g. A/[A+C+G+T] ).

Where can I find the formula for this calculation?


igv snv varint calling • 592 views
ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by omer.k40
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