Question: IGV: how is "Quality weight allele fraction" calculated?
gravatar for omer.k
12 months ago by
omer.k20 wrote:

I'm inspecting raw NGS reads from human using IGV. The allele frequency threshold is kept at the default 0.2.

Yet this is apparently "Quality weight allele fraction" (IGV Preferences) and not regular fraction (e.g. A/[A+C+G+T] ).

Where can I find the formula for this calculation?


igv snv varint calling • 318 views
ADD COMMENTlink modified 12 months ago • written 12 months ago by omer.k20
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