Hi there, I'm trying to visualize a reference genome in IGV and annotate the genes using a custom made GFF file. The snapshot of the IGV looks something like this. I am particularly curious about the pink labeled track. The GFF for the pink track looks something like this:
NC_023010.2 glimmer cds 5011 3686 3.08 - 1 orf00005;
NC_023010.2 glimmer cds 5052 5264 0.82 + 2 orf00006;
NC_023010.2 glimmer cds 5637 6800 3.11 + 2 orf00007;
As you can see, orf00005 is labeled differently. Does anyone know why this is so? Is that partial gene?
Thanks for the help!