Question: Common Gene Expression Pattern From Matrix
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gravatar for nikitavlassenko
11 months ago by
nikitavlassenko20 wrote:

I am using Seurat for my single cell RNA-seq dataset and I subset it to get a dataset of 80 cells vs 20 000 genes. Now I need to find genes that are expressed similarly across all of the 80 cells, similar patterns of expression. Can I do it with Seurat? What other software could I use for that and how?

rna-seq R • 586 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by nikitavlassenko20
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gravatar for nikitavlassenko
11 months ago by
nikitavlassenko20 wrote:

Ultimately I decided to subdivide the dataset into certain groups, and use FindMarkers function to do DE:

https://satijalab.org/seurat/de_vignette.html

ADD COMMENTlink written 11 months ago by nikitavlassenko20
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