Question: Get DNA sequence from NCBI database, having a bunch of information about the entry
0
gravatar for orelsmail
11 months ago by
orelsmail0
orelsmail0 wrote:

Hello everybody. I am doing a project for college, and I am looking for a database to extract a DNA sequence of a certain species. The information I have: tax_id Org_name GeneID CurrentID Status Symbol Aliases description other_designations map_location chromosome genomic_nucleotide_accession.version start_position_on_the_genomic_accession end_position_on_the_genomic_accession orientation exon_count OMIM

I looked through the FTP servers of the NCBI, and I couldn't find any way to recognize the species through the information I have, although I am pretty certain it's more than enough to do so.

Thanks ahead.

dna extractdna ncbiftp ncbi • 312 views
ADD COMMENTlink written 11 months ago by orelsmail0

in stead of looking in the ftp location, have you tried querying it through the NCBI website query form? Using the advanced query option you can easily formulate very specific queries.

ADD REPLYlink modified 11 months ago • written 11 months ago by lieven.sterck4.5k

Also inputting the tax_id in the NCBI taxonomy database would give the species information.

ADD REPLYlink written 11 months ago by microfuge1.0k

Hello orelsmail,

which sequence do you want to fetch? Reference Genome of the species? Sequence of the gene? Sequence of a certain transcript?

fin swimmer

ADD REPLYlink written 11 months ago by finswimmer11k
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