Dear all
I followed some links here in biostar to get the differential expressions of my RNAseq data for tumor vs control. Then I get the pathways, I did somatic mutations using GATK pipeline to get some somatic mutations.
I found some differentially expressed genes and found common somatic mutations in them, could be interesting. Then I analyzed the top pathways to see if they are related to cancers, nothing interesting is found.
I am still trying to connect pieces. Any suggestion how can I conclude my results? What else we can do?
Thank you
Thank you Kevin for the detailed answer. Thats so amazing :) Good to learn about deconvoluting RNAseq data, this is interesting, I need to learn that :)
Thanks I actually need to follow my own advice and do these things on my data, too :)