Question: Genome/Exome + RNASeq cohort
0
gravatar for Nick
20 months ago by
Nick20
NIH
Nick20 wrote:

Does this exist? I'm looking for a substantial cohort with genomes or exomes AND rnaseq data for a number of individuals.

I know of the Mayo GWAS... but ideally, I'm looking for genome/exome data to come as either raw FASTQs that I can process on my own, or downloadable gvcfs or even vcfs. I'd like RNAseq data as raw fastqs or to have the gene list output of a differential expression analysis.

cohort rna-seq gwas exome genome • 420 views
ADD COMMENTlink written 20 months ago by Nick20

Does the tissue matter?

ADD REPLYlink written 20 months ago by WouterDeCoster42k

Blood or fibroblast would be ideal; but no, not really.

ADD REPLYlink written 20 months ago by Nick20

You could search the EGA, ENA, ArrayExpress, SRA, etc.

ADD REPLYlink written 20 months ago by Kevin Blighe53k
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