Uniprot SPARQL: InterPro domain positions
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Entering edit mode
3.4 years ago

Hi

Using the uniprot sparql endpoint (https://sparql.uniprot.org/) I'm looking for a way to extract start/end positional information for each InterProscan domain.

Example:

PREFIX up:<http://purl.uniprot.org/core/>  
PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>  
SELECT DISTINCT *
WHERE{
   VALUES ?protein {<http://purl.uniprot.org/uniprot/P30443>} .
   ?protein rdfs:seeAlso ?sa .
   ?sa up:database <http://purl.uniprot.org/database/InterPro> .
}

I think it should be possible somehow...

Cheers, Fabian

sparql • 868 views
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