I'm trying to annotate 9 tables of structural variants called by Delly2 with svAnnotation from the intansv package. While annotating duplications, I systemically get the error "Error : solving row 4: negative widths are not allowed". But my tables don't contain any negative width, here is for instance a structural variant that can't be annotated :
chr3 140621105 140622358 1253 PE=2;SR=4
When I remove these lines, it works perfectly.
Could anyone please help me ?
Thank you very much