I am struggling to get a .vcf file from an Illumina SNPChip results (.bsc file). I opened the .bsc file using GenomeStudio software and exported results in PLINK format, using Plink plugin...
Like this, I've got .ped and .map files (but not .bed, .bim or .fam files). Now I am trying to use PLINK/SEQ to reach the vcf file I need, but with no success.
Could someone help me with this problem... I've already tried so many things.
Thanks in advance!