Question: epitope analysis for multiple sequenes
0
gravatar for d16082
2.5 years ago by
d160820
d160820 wrote:

Dear all, I've downloaded the free command line version of the IEDB software to predict B cell epitopes?

Does anyone know whether is it possible to run multiple proteins from a single file? I tried to do that and firstly it complained about the ">" from the headers. So I removed them such that the proteins were separated by an empty line (enter). But then the program considered my proteins as a single one. Does anyone know how to get around that?

sequence • 477 views
ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by d160820

You can write a bash script and just loop (for/while) over each sequence

ADD REPLYlink written 2.5 years ago by MSM55140

can you please explain, im unable to understand.

ADD REPLYlink written 2.5 years ago by d160820

Can you send me the IEDB software command so I can write script for you.

Are you using Linux or any other operating system ?

ADD REPLYlink written 2.5 years ago by MSM55140

these two links, '"http://tools.iedb.org/bcell/" "ailab.ist.psu.edu/bcpred/predict.html" im using two prediction. and im using windows 10 operating system.

ADD REPLYlink written 2.5 years ago by d160820

hello sir,

could you please explain me, how to write the script

ADD REPLYlink written 2.5 years ago by d160820
0
gravatar for d16082
2.5 years ago by
d160820
d160820 wrote:

can you please explain, im unable to understand.

ADD COMMENTlink written 2.5 years ago by d160820

You can use LWP or WWW::Mechanize module in perl.

ADD REPLYlink written 2.5 years ago by MSM55140
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1528 users visited in the last hour