Hello !! I want to process several pdb files.I am using pdb file from OPM database.It has the orientation of proteins in the membrane.The membrane region in pdb file is marked with dummy atom 'DUM'.I want to extract all the protein Atoms of chain A in the membrane region.Along with the dummy atoms.I am stuck in doing both.I would appreciate if i get a guidance and help.
lines = open('1fx8.pdb').readlines()
outlines = ''
for line in lines:
if line.startswith('ATOM') and line == 'A' and (line[47:54] >= -14.800 or line[47:54] <= 14.800): outlines += line
outfile = open('ChainA_1fx8.pdb', 'w')