Hello everyone! I am new to manipulating VCF files, and they recommended me the EBIvariation/vcf-validator to check that the file is correctly put. I got from my variant calling (I don't do it, it's the output of the service we pay for) a vcf file which has many repeated info in the INFO field of it, for example:
AA=p.K2811fs46,p.K2811fs46; CDS=c.8426delA,c.8426delA; CNT=1,1
Apparently, having "p.K2811fs*46" twice is not valid, so I should keep only one.
I cannot yet find any tool that does this (not sure if there even is one at all), but any help is very welcome!!!