Question: BLAST RNASeq assembled fastq file to a gene sequence
gravatar for Smandape
2.1 years ago by
United States
Smandape60 wrote:

Hello Experts,

I have de novo assembled RNASeq data. I want to see if my gene of interest shows up in this assembled data.

The assembled RNASeq data is about 50GB.

Would BLAST2BLAST / CLC genomics be a good option to find matching sequence in RNASeq data?

What would be a good way to find my gene of interest in RNASeq data?

Thank you!

blast rna-seq gene • 568 views
ADD COMMENTlink written 2.1 years ago by Smandape60

Multiple options mentioned here: Finding a gene of interest in contigs from a transcriptome sequencing.

ADD REPLYlink written 2.1 years ago by genomax85k
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