Question: edgeR 2GB table
0
gravatar for bxia
13 months ago by
bxia140
bxia140 wrote:

I have a table with 10000 htseq samples...the file size is 1.7Gb... how to analyze it with edgeR?

rna-seq • 296 views
ADD COMMENTlink written 13 months ago by bxia140

With that many samples the performance isn't going to be great. I would suggest limma as a more performant alternative then.

Is this scRNAseq? That's about the only time you'd have so many samples.

ADD REPLYlink written 13 months ago by Devon Ryan90k
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