Question: Biobase not running in R 3.5.0
0
gravatar for dodausp
6 months ago by
dodausp60
Denmark/Copenhagen/BRIC
dodausp60 wrote:

Hi, everyone

I am trying to load Biobase onto my R (I'm using R studio v. 1.0.143), but it gives me the following error message:

> library("Biobase", lib.loc="/Library/Frameworks/R.framework/Versions/3.5/Resources/library")

Error: package or namespace load failed for 'Biobase': package 'Biobase' was installed by an R version with different internals; it needs to be reinstalled for use with this R version

It happened right after I updated R, from 3.3.x to 3.5.0. I did update and reinstalled the Biobase package as well just in case I have missed any previous ones. Is there anybody facing the same problem? Or even better, is there any fix for that? Or run the older version as before?

Thanks in advance!

biobase R • 2.3k views
ADD COMMENTlink modified 6 months ago • written 6 months ago by dodausp60

That was very helpful! .libPaths()was pointing to the correct directory and subfolders. What I did however was to delete the Biobase folder from my package directory and replace it by the newly downloaded one. The version was the same, but somehow it worked this way.

Thanks a lot!!!

ADD REPLYlink written 6 months ago by dodausp60
1

For future reference:

Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized. This comment belongs under @h.mon's answer.

ADD REPLYlink modified 6 months ago • written 6 months ago by genomax59k
4
gravatar for h.mon
6 months ago by
h.mon21k
Brazil
h.mon21k wrote:

Check .libPaths(), probably the older Biobase is still installed and has precedence over the newer one. The BioConductor install page has a section on "Troubleshoot Package Installations", follow its instructions.

ADD COMMENTlink modified 6 months ago • written 6 months ago by h.mon21k
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