Hi all, I'm trying to use Diffbind to identify differentially open regions (identified using ATAC-seq) between three different cell types. I have three biological replicates for each cell type. I'm building now the sample sheet to import the data into Diffbind, but I don't know what I should indicate as a control since ATAC do not have controls. Is there a way to avoid this problem?
Question: Diffbind for ATAC-seq data with no controls
8 months ago by
daniele.avancini • 10
daniele.avancini • 10 wrote:
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