Question: CDS prediction for newly assembled transcripts
0
gravatar for I0110
18 months ago by
I0110120
United States
I0110120 wrote:

I am using stringtie for a reference-guided transcriptome assembly. For all of the isoforms with novel junctions or other novel transcripts, how can I predict the potential CDS? Is there a tool available for this? Thanks!!!

ADD COMMENTlink written 18 months ago by I0110120
1

Transdecoder is popular for this purpose.

ADD REPLYlink written 18 months ago by genomax75k
1

more tools: Best command line ORF finder

ADD REPLYlink written 18 months ago by I0110120
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