I am doing phylodynamic analysis of virus sequences using bayesian method using BEAUti and BEAST. As a part of my analysis I am using Tracer to check how my model is working.
I can interpret some of the results like from the Tracer like :
clock.rate - rate of nucleotide substitution
treemodel.rootheight- time when divergence occured
ESS- measures sampling quality (ideally has to be greater that 200)
But there are other many terms on this analysis which I have no idea how to explain.
Please can anybody help me to find out what other aspects of the evolution can be explained using this table.
tmrca(China ) 11.752
tmrca(allseq) 32.271 < constant.popSize 43.595
frequencies4 0.26 5001
CP1.mu 0.76 CP2.mu 1.221
branchRates 0E0 coalescent -467.376