Question: Differential co-expression analysis on TCGA transcriptomic data
0
gravatar for nazaninhoseinkhan
12 months ago by
Iran, Islamic Republic Of
nazaninhoseinkhan360 wrote:

Dear all,

I am going to use TCGA data with "open" label for my project.

As you probably know, The "open" data are the analyzed data and for example for RNASeq or miRNASeq the normalized read counts (FPKM) have been reported as text files.

Now my question is: if I want to obtain the list of differential expressed genes between tumor and normal samples, what procedures should I use?

Can I use edgeR or Deseq2 on these data which are in txt format?

Thank you in advance

Nazanin

ADD COMMENTlink written 12 months ago by nazaninhoseinkhan360
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1480 users visited in the last hour